Promega Corporation

Alternative Proteases

Figure 9356CA

Trypsin, the most widely used protease in mass spectrometry analysis, utilizes its high specificity to cleave proteins, resulting in peptides with a strong C-terminal charge. When working with tightly folded proteins, these proteins can resist trypsin digestion and inadequate distribution of trypsin cleavage sites in certain proteins can generate peptides that are either too long or too short. In addition, post-translation modification (PTMs) present yet another challenge because glycans often limit trypsin access to cleavage sites, whereas acetylation or di- and trimethylation of lysine and arginine residues make them resistant to trypsin digestion. Promega offers several alternative proteases and a unique surfactant that can complement standard tryptic digestions to provide enhanced data.

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Increase Protein Sequence Coverage With:

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Lys-C/Chymotrypsin

Both Lys-C and Chymotrypsin, when used as alternative proteases with trypsin, have shown their value in extending proteomics coverage for bottom-up protein identification and for mapping of post-translational modification.

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Asp-N/Glu-C

Endoproteinases Asp-N and Glu-C have been used for protein characterization for over 30 years and due to their specific cleavage sites, these proteinases create unique peptide fragments available for mass spectrometry analysis.

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Pepsin/Thermolysin

Thermolysin and pepsin are distinct from other proteases because they tolerate extreme conditions: high temperatures and low pH, respectively. These properties make them ideal proteases for digestion of proteolytically resistant, tightly folded proteins.

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Enhance Digestion of Difficult Proteins With:

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Pepsin/Thermolysin

Thermolysin and pepsin are distinct from other proteases because they tolerate extreme conditions: high temperatures and low pH, respectively. These properties make them ideal proteases for digestion of proteolytically resistant, tightly folded proteins.

Figure 10691MA

Improve Data for PTM Analysis With:

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Arg-C

In recent experiments, we have shown a parallel Arg-C digestion complemented the trypsin digestion by recovering an additional 2,653 peptides and providing a 37.4% increase in the number of identified peptides. In this same experiment, this also resulted in an increase in the number of identified proteins.

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